API Reference

• IO: Reading and Writing Data
  • Submodules:
  • Dependencies:
  • Abstract Base Classes
  • Scoring
  • IPF
  • Levels Context
  • Export
• Configuration Data Classes
  • Abstract Base Classes
  • Scoring Configuration
  • IPF Configuration
  • Levels Context Configuration
  • Export Configuration
• Semi-Supervised Scoring Documentation
  • Submodules:
  • Dependencies:
  • Runner
  • PyProphet
  • Semi-Supervised
  • Classifiers
  • Data Handling
• Inference of Peptidoforms Documentation
  • infer_peptidoforms
  • peptidoform_inference
  • precursor_inference
  • apply_bm
  • prepare_transition_bm
  • transfer_confident_evidence_across_runs
  • prepare_precursor_bm
  • compute_model_fdr
• Context and FDR Estimation Documentation
  • statistics_report
  • infer_peptides
  • infer_glycopeptides
  • infer_proteins
  • infer_genes